HL_6Y0G_027

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

6Y0G|1|L5|C|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_027 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3617

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6Y0G|1|L5|C|1436
6Y0G|1|L5|C|1437
6Y0G|1|L5|U|1438
6Y0G|1|L5|C|1439
6Y0G|1|L5|U|1440
6Y0G|1|L5|C|1441
6Y0G|1|L5|C|1442
6Y0G|1|L5|A|1443
6Y0G|1|L5|G|1444
6Y0G|1|L5|U|1445
6Y0G|1|L5|C|1446
6Y0G|1|L5|C|1447
6Y0G|1|L5|G|1448

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18