HL_6Y0G_036

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

6Y0G|1|L5|A|1891, 6Y0G|1|L5|A|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_036 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.0848

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Y0G|1|L5|G|1886
6Y0G|1|L5|G|1887
6Y0G|1|L5|A|1888
6Y0G|1|L5|U|1889
6Y0G|1|L5|G|1890
6Y0G|1|L5|A|1891
6Y0G|1|L5|A|1892
6Y0G|1|L5|C|1893

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a