HL_6Y0G_072

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_072 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.26

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Y0G|1|L5|C|4417
6Y0G|1|L5|G|4418
6Y0G|1|L5|U|4419
6Y0G|1|L5|U|4420
6Y0G|1|L5|C|4421
6Y0G|1|L5|A|4422
6Y0G|1|L5|U|4423
6Y0G|1|L5|A|4424
6Y0G|1|L5|G|4425

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40