HL_6Y0G_093

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6Y0G|1|S2|G|291, 6Y0G|1|S2|A|292, 6Y0G|1|S2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_093 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3643

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6Y0G|1|S2|G|288
6Y0G|1|S2|G|289
6Y0G|1|S2|U|290
6Y0G|1|S2|G|291
6Y0G|1|S2|A|292
6Y0G|1|S2|C|293
6Y0G|1|S2|U|294
6Y0G|1|S2|C|295

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11