HL_6Y2L_069

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6Y2L|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y2L_069 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1051

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6Y2L|1|L5|A|4474
6Y2L|1|L5|G|4475
6Y2L|1|L5|C|4476
6Y2L|1|L5|A|4477
6Y2L|1|L5|G|4478
6Y2L|1|L5|A|4479
6Y2L|1|L5|A|4480
6Y2L|1|L5|U|4481

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40