HL_6Y57_032

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6Y57|1|L5|C|1676, 6Y57|1|L5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_032 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.3812

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6Y57|1|L5|C|1675
6Y57|1|L5|C|1676
6Y57|1|L5|U|1677
6Y57|1|L5|C|1678
6Y57|1|L5|A|1679
6Y57|1|L5|G|1680

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a