3D structure

PDB id
6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in hybrid-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAUGAAC
Length
8 nucleotides
Bulged bases
6Y57|1|L5|A|1891, 6Y57|1|L5|A|1892
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6Y57_036 not in the Motif Atlas
Homologous match to HL_5TBW_026
Geometric discrepancy: 0.1035
The information below is about HL_5TBW_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_44398.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6Y57|1|L5|G|1886
6Y57|1|L5|G|1887
6Y57|1|L5|A|1888
6Y57|1|L5|U|1889
6Y57|1|L5|G|1890
6Y57|1|L5|A|1891
6Y57|1|L5|A|1892
6Y57|1|L5|C|1893

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LF
60S ribosomal protein L7
Chain Le
60S ribosomal protein L32
Chain Lf
60S ribosomal protein L35a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2329 s