HL_6Y57_059

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6Y57|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_059 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1546

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Y57|1|L5|G|3757
6Y57|1|L5|U|3758
6Y57|1|L5|A|3759
6Y57|1|L5|A|3760
6Y57|1|L5|C|3761
6Y57|1|L5|U|3762
6Y57|1|L5|A|3763
6Y57|1|L5|U|3764
6Y57|1|L5|G|3765
6Y57|1|L5|A|3766
6Y57|1|L5|C|3767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA