HL_6Y57_061

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6Y57|1|L5|A|3876, 6Y57|1|L5|A|3877, 6Y57|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y57_061 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.1118

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6Y57|1|L5|G|3873
6Y57|1|L5|G|3874
6Y57|1|L5|G|3875
6Y57|1|L5|A|3876
6Y57|1|L5|A|3877
6Y57|1|L5|C|3878
6Y57|1|L5|G|3879
6Y57|1|L5|G|3880
6Y57|1|L5|G|3881
6Y57|1|L5|C|3882

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32