HL_6Y57_129
3D structure
- PDB id
- 6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in hybrid-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 6Y57|1|S2|U|1300, 6Y57|1|S2|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Y57_129 not in the Motif Atlas
- Homologous match to HL_8P9A_216
- Geometric discrepancy: 0.3145
- The information below is about HL_8P9A_216
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_45359.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6Y57|1|S2|A|1295
6Y57|1|S2|U|1296
6Y57|1|S2|U|1297
6Y57|1|S2|G|1298
6Y57|1|S2|A|1299
6Y57|1|S2|U|1300
6Y57|1|S2|A|1301
6Y57|1|S2|G|1302
6Y57|1|S2|C|1303
6Y57|1|S2|U|1304
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain sh
- Ubiquitin-40S ribosomal protein S27a
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