HL_6Y69_042

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6Y69|1|A|U|1729, 6Y69|1|A|C|1730, 6Y69|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y69_042 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3526

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6Y69|1|A|C|1727
6Y69|1|A|C|1728
6Y69|1|A|U|1729
6Y69|1|A|C|1730
6Y69|1|A|G|1731
6Y69|1|A|C|1732
6Y69|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains