HL_6Y69_052

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6Y69|1|A|A|2268, 6Y69|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y69_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0614

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6Y69|1|A|C|2264
6Y69|1|A|U|2265
6Y69|1|A|A|2266
6Y69|1|A|A|2267
6Y69|1|A|A|2268
6Y69|1|A|G|2269
6Y69|1|A|A|2270
6Y69|1|A|G|2271
6Y69|1|A|U|2272
6Y69|1|A|A|2273
6Y69|1|A|A|2274
6Y69|1|A|C|2275
6Y69|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27