HL_6Y69_056

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y69_056 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.0731

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6Y69|1|A|C|2374
6Y69|1|A|G|2375
6Y69|1|A|A|2376
6Y69|1|A|A|2377
6Y69|1|A|A|2378
6Y69|1|A|G|2379

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain O

50S ribosomal protein L18