HL_6Y69_064

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6Y69|1|A|G|2751, 6Y69|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y69_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0837

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6Y69|1|A|C|2745
6Y69|1|A|U|2746
6Y69|1|A|G|2747
6Y69|1|A|A|2748
6Y69|1|A|A|2749
6Y69|1|A|A|2750
6Y69|1|A|G|2751
6Y69|1|A|C|2752
6Y69|1|A|A|2753
6Y69|1|A|U|2754
6Y69|1|A|C|2755
6Y69|1|A|U|2756
6Y69|1|A|A|2757
6Y69|1|A|A|2758
6Y69|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13