HL_6Y69_077

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y69_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0798

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6Y69|1|a|A|320
6Y69|1|a|A|321
6Y69|1|a|C|322
6Y69|1|a|U|323
6Y69|1|a|G|324
6Y69|1|a|A|325
6Y69|1|a|G|326
6Y69|1|a|A|327
6Y69|1|a|C|328
6Y69|1|a|A|329
6Y69|1|a|C|330
6Y69|1|a|G|331
6Y69|1|a|G|332
6Y69|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20