HL_6Y6X_001

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

6Y6X|1|L5|A|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y6X_001 not in the Motif Atlas

Homologous match to HL_5TBW_001

Geometric discrepancy: 0.1188

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Y6X|1|L5|U|37
6Y6X|1|L5|A|38
6Y6X|1|L5|A|39
6Y6X|1|L5|G|40
6Y6X|1|L5|C|41
6Y6X|1|L5|A|42
6Y6X|1|L5|U|43
6Y6X|1|L5|A|44

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a