HL_6Y6X_004

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6Y6X|1|L5|G|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y6X_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.5707

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6Y6X|1|L5|C|131
6Y6X|1|L5|G|132
6Y6X|1|L5|C|133
6Y6X|1|L5|G|134
6Y6X|1|L5|G|135
6Y6X|1|L5|C|136
6Y6X|1|L5|G|137

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37