3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6Y6X_022 not in the Motif Atlas
Homologous match to HL_8C3A_019
Geometric discrepancy: 0.1184
The information below is about HL_8C3A_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6Y6X|1|L5|G|1561
6Y6X|1|L5|G|1562
6Y6X|1|L5|A|1563
6Y6X|1|L5|A|1564
6Y6X|1|L5|A|1565
6Y6X|1|L5|C|1566

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain Lp
60S ribosomal protein L37a

Coloring options:


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