HL_6Y6X_075

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y6X_075 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.253

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6Y6X|1|L5|C|5021
6Y6X|1|L5|U|5022
6Y6X|1|L5|C|5023
6Y6X|1|L5|C|5024
6Y6X|1|L5|C|5025
6Y6X|1|L5|U|5026
6Y6X|1|L5|C|5027
6Y6X|1|L5|G|5028

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LU

60S ribosomal protein L22