HL_6Y7C_004

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_004 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1667

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6Y7C|1|2|C|190
6Y7C|1|2|C|191
6Y7C|1|2|U|192
6Y7C|1|2|U|193
6Y7C|1|2|U|194
6Y7C|1|2|G|195

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8-A