RNA 3D Hub //

6Y7C Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6Y7C_0011/2/7:17No text annotation
HL_6Y7C_0371/2/64:86No text annotation
HL_6Y7C_0031/2/154:160GNRA related
homologous
HL_4V88_188
NA
HL_6Y7C_0061/2/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6Y7C_0081/2/330:338GNRA related
homologous
HL_4V88_193
NA
HL_6Y7C_0091/2/368:373No text annotation
homologous
HL_4V88_194
NA
HL_6Y7C_0101/2/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6Y7C_0111/2/414:419UNCG
homologous
HL_8P9A_200
HL_61337.1
HL_6Y7C_0121/2/450:456No text annotation
homologous
HL_4V88_197
NA
HL_6Y7C_0141/2/520:532No text annotation
homologous
HL_4V88_199
NA
HL_6Y7C_0391/2/562:583No text annotation
HL_6Y7C_0151/2/568:575GNRA with extra cWW
geometric
HL_7A0S_056
HL_45359.1
HL_6Y7C_0441/2/764:772No text annotation
homologous
HL_8CRE_207
HL_11974.1
HL_6Y7C_0251/2/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_6Y7C_0271/2/1188:1197No text annotation
geometric
HL_4WF9_009
HL_87381.1

Problematic loops

#loop idProblemSequence
HL_6Y7C_002No text annotation
HL_6Y7C_038No text annotation
HL_6Y7C_004No text annotation
HL_6Y7C_005No text annotation
HL_6Y7C_007Mini UNCG
HL_6Y7C_013No text annotation
HL_6Y7C_016No text annotation
HL_6Y7C_017No text annotation
HL_6Y7C_018No text annotation
HL_6Y7C_019No text annotation
HL_6Y7C_020No text annotation
HL_6Y7C_040No text annotation
HL_6Y7C_021No text annotation
HL_6Y7C_022GNRA
HL_6Y7C_023No text annotation
HL_6Y7C_041No text annotation
HL_6Y7C_024No text annotation
HL_6Y7C_026GNRA
HL_6Y7C_042No text annotation
HL_6Y7C_028No text annotation
HL_6Y7C_029No text annotation
HL_6Y7C_030No text annotation
HL_6Y7C_031No text annotation
HL_6Y7C_043No text annotation
HL_6Y7C_032No text annotation
HL_6Y7C_033No text annotation
HL_6Y7C_034No text annotation
HL_6Y7C_035No text annotation
HL_6Y7C_036GNRA variation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6Y7C_0011/2/24:26,
1/2/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_6Y7C_0021/2/35:37,
1/2/471:473		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6Y7C_0031/2/37:41,
1/2/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_6Y7C_0041/2/42:48,
1/2/431:433		No text annotation
homologous
IL_4V88_387
NA
IL_6Y7C_0051/2/50:52,
1/2/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_6Y7C_0061/2/58:63,
1/2/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_6Y7C_0071/2/64:69,
1/2/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_6Y7C_0081/2/109:112,
1/2/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6Y7C_0091/2/113:116,
1/2/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6Y7C_0101/2/117:122,
1/2/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6Y7C_0111/2/143:149,
1/2/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6Y7C_0841/2/150:153,
1/2/161:164		No text annotation
homologous
IL_8C3A_403
NA
IL_6Y7C_0141/2/204:206,
1/2/259:263		Major groove platform with extra cWW
geometric
IL_4V88_397
NA
IL_6Y7C_0151/2/206:209,
1/2/256:259		Tandem non-canonical cWW pairs
geometric
IL_1L9A_002
NA
IL_6Y7C_0161/2/265:267,
1/2/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_6Y7C_0171/2/270:273,
1/2/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_6Y7C_0191/2/311:316,
1/2/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6Y7C_0891/2/318:323,
1/2/345:346		No text annotation
homologous
IL_8P9A_392
IL_01372.1
IL_6Y7C_0211/2/363:365,
1/2/376:381		No text annotation
homologous
IL_4V88_404
NA
IL_6Y7C_0221/2/389:391,
1/2/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6Y7C_0901/2/411:413,
1/2/420:422		No text annotation
homologous
IL_8CRE_412
IL_42997.4
IL_6Y7C_0241/2/439:441,
1/2/463:464		Single bulged U
geometric
IL_5J7L_017
NA
IL_6Y7C_0251/2/443:447,
1/2/460:461		C-loop
geometric
IL_4LFB_015
IL_26900.1
IL_6Y7C_0261/2/447:448,
1/2/458:460		Single bulged G
geometric
IL_5J7L_019
NA
IL_6Y7C_0281/2/516:518,
1/2/533:536		Minor groove platform with extra cWW
homologous
IL_4V88_411
NA
IL_6Y7C_0291/2/518:520,
1/2/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_6Y7C_0301/2/550:557,
1/2/587:588		Multiple bulged bases
geometric
IL_4YAZ_008
IL_71421.1
IL_6Y7C_0331/2/616:622,
1/2/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_6Y7C_0911/2/748:750,
1/2/799:801		Isolated non-canonical cWW pair
homologous
IL_8P9A_413
IL_71625.1
IL_6Y7C_0401/2/751:759,
1/2/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_6Y7C_0921/2/868:870,
1/2/957:960		Isolated cWH basepair
homologous
IL_8CRE_432
IL_10892.1
IL_6Y7C_0501/2/1034:1037,
1/2/1094:1101		No text annotation
IL_6Y7C_0511/2/1041:1046,
1/2/1072:1077		No text annotation
IL_6Y7C_0611/2/1292:1306,
1/2/1318:1323		No text annotation
IL_6Y7C_0771/2/1669:1672,
1/2/1729:1732		Double sheared
geometric
IL_3D0U_002
IL_58355.1
IL_6Y7C_0781/2/1672:1674,
1/2/1727:1729		Isolated non-canonical cWW pair
homologous
IL_4V88_472
NA
IL_6Y7C_0791/2/1675:1678,
1/2/1723:1726		Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA
IL_6Y7C_0811/2/1770:1771,
1/2/1791:1793		No text annotation
IL_6Y7C_0821/2/1771:1772,
1/2/1789:1791		Single stack bend
geometric
IL_7RQB_005
NA

Problematic loops

#loop idProblemSequence
IL_6Y7C_083Isolated non-canonical cWW pair
IL_6Y7C_012Tandem non-canonical cWW pairs
IL_6Y7C_013Double sheared
IL_6Y7C_018Single bulged U
IL_6Y7C_020No text annotation
IL_6Y7C_023No text annotation
IL_6Y7C_027No text annotation
IL_6Y7C_031Single bulged U
IL_6Y7C_032Kink-turn related
IL_6Y7C_034Isolated non-canonical cWW pair
IL_6Y7C_035tSH-tHW-tHS
IL_6Y7C_085No text annotation
IL_6Y7C_036No text annotation
IL_6Y7C_037No text annotation
IL_6Y7C_038Major groove minor groove platform; mini C-loop
IL_6Y7C_039Tandem non-canonical cWW pairs
IL_6Y7C_041No text annotation
IL_6Y7C_042Major groove platform; stack outside cWW
IL_6Y7C_043Tandem non-canonical cWW pairs
IL_6Y7C_086Isolated non-canonical cWW pair
IL_6Y7C_044Tandem non-canonical cWW pairs
IL_6Y7C_045Tandem non-canonical cWW pairs
IL_6Y7C_046Tandem non-canonical cWW pairs
IL_6Y7C_047Kink-turn related
IL_6Y7C_048Other IL
IL_6Y7C_049tSH-tHW-tHS
IL_6Y7C_052No text annotation
IL_6Y7C_053No text annotation
IL_6Y7C_0548x6 Sarcin-Ricin with inserted Y; G-bulge
IL_6Y7C_055Tandem non-canonical cWW pairs
IL_6Y7C_087Isolated cWH basepair
IL_6Y7C_056Tandem non-canonical cWW pairs
IL_6Y7C_057Minor groove platform
IL_6Y7C_058No text annotation
IL_6Y7C_059No text annotation
IL_6Y7C_060Isolated cWH basepair
IL_6Y7C_062No text annotation
IL_6Y7C_063No text annotation
IL_6Y7C_064No text annotation
IL_6Y7C_065Isolated non-canonical cWW pair
IL_6Y7C_066No text annotation
IL_6Y7C_088No text annotation
IL_6Y7C_067No text annotation
IL_6Y7C_068180 degree turn
IL_6Y7C_069No text annotation
IL_6Y7C_070No text annotation
IL_6Y7C_071No text annotation
IL_6Y7C_072Isolated non-canonical cWW pair
IL_6Y7C_073Tandem non-canonical cWW pairs
IL_6Y7C_074Isolated non-canonical cWW pair
IL_6Y7C_075Single bulged G, near cWW
IL_6Y7C_076Isolated non-canonical cWW pair
IL_6Y7C_080Triple sheared

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6Y7C_0011/2/41:42,
1/2/433:439,
1/2/464:466		No text annotation
homologous
J3_8P9A_068
J3_58657.1
J3_6Y7C_0191/2/213:228,
1/2/237:243,
1/2/250:252		No text annotation
J3_6Y7C_0021/2/633:635,
1/2/861:865,
1/2/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6Y7C_0101/2/633:635,
1/2/861:866,
1/2/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_6Y7C_0201/2/760:763,
1/2/773:775,
1/2/785:790		No text annotation
J3_6Y7C_0031/2/881:884,
1/2/928:936,
1/2/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6Y7C_0041/2/1037:1039,
1/2/1079:1083,
1/2/1090:1094		No text annotation
geometric
J3_8C3A_037
NA
J4_6Y7C_0011/2/99:107,
1/2/307:309,
1/2/357:361,
1/2/383:384		No text annotation
homologous
J4_8C3A_021
NA
J5_6Y7C_0011/2/31:35,
1/2/473:479,
1/2/509:516,
1/2/536:546,
1/2/592:595		No text annotation
J5_6Y7C_0061/2/54:57,
1/2/90:97,
1/2/386:388,
1/2/409:411,
1/2/422:426		No text annotation
homologous
J5_8CRE_020
J5_58574.1
J5_6Y7C_0031/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:265,
1/2/289:293		No text annotation
J5_6Y7C_0041/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:267,
1/2/288:293		No text annotation
J6_6Y7C_0011/2/1028:1032,
1/2/1103:1109,
1/2/1136:1148,
1/2/1629:1635,
1/2/1769:1771,
1/2/1791:1792		No text annotation

Problematic loops

#loop idProblemSequence
J3_6Y7C_009No text annotation
J3_6Y7C_011No text annotation
J3_6Y7C_012No text annotation
J3_6Y7C_013No text annotation
J3_6Y7C_014No text annotation
J3_6Y7C_005No text annotation
J3_6Y7C_021No text annotation
J3_6Y7C_022No text annotation
J3_6Y7C_006No text annotation
J3_6Y7C_015No text annotation
J3_6Y7C_016No text annotation
J3_6Y7C_007No text annotation
J3_6Y7C_017No text annotation
J3_6Y7C_008No text annotation
J3_6Y7C_018No text annotation
J5_6Y7C_002No text annotation
J5_6Y7C_007No text annotation
J5_6Y7C_005No text annotation

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