HL_6Y7C_014

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_014 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.2175

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6Y7C|1|2|A|520
6Y7C|1|2|A|521
6Y7C|1|2|U|522
6Y7C|1|2|G|523
6Y7C|1|2|U|524
6Y7C|1|2|A|525
6Y7C|1|2|A|526
6Y7C|1|2|A|527
6Y7C|1|2|U|528
6Y7C|1|2|A|529
6Y7C|1|2|C|530
6Y7C|1|2|C|531
6Y7C|1|2|U|532

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A

Chain t

Ribosome biogenesis protein TSR1