HL_6Y7C_020

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

6Y7C|1|2|G|834, 6Y7C|1|2|U|835

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_020 not in the Motif Atlas

Homologous match to HL_8P9A_208

Geometric discrepancy: 0.5499

The information below is about HL_8P9A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|C|827
6Y7C|1|2|U|828
6Y7C|1|2|A|829
6Y7C|1|2|U|830
6Y7C|1|2|U|831
6Y7C|1|2|U|832
6Y7C|1|2|U|833
6Y7C|1|2|G|834
6Y7C|1|2|U|835
6Y7C|1|2|U|836
6Y7C|1|2|G|837
6Y7C|1|2|G|838
6Y7C|1|2|U|839
6Y7C|1|2|U|840
6Y7C|1|2|U|841
6Y7C|1|2|C|842
6Y7C|1|2|U|843
6Y7C|1|2|A|844
6Y7C|1|2|G|845

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S11-A