HL_6Y7C_027

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6Y7C|1|2|A|1194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y7C_027 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3911

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87381.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

6Y7C|1|2|G|1188
6Y7C|1|2|A|1189
6Y7C|1|2|C|1190
6Y7C|1|2|U|1191
6Y7C|1|2|C|1192
6Y7C|1|2|A|1193
6Y7C|1|2|A|1194
6Y7C|1|2|C|1195
6Y7C|1|2|A|1196
6Y7C|1|2|C|1197

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain d

40S ribosomal protein S29-A

Chain l

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1