HL_6Y7C_028

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUGACAGAUUGAGAGCUCUUUCUUGAU

Length

28 nucleotides

Bulged bases

6Y7C|1|2|A|1242

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|A|1230
6Y7C|1|2|U|1231
6Y7C|1|2|U|1232
6Y7C|1|2|G|1233
6Y7C|1|2|A|1234
6Y7C|1|2|C|1235
6Y7C|1|2|A|1236
6Y7C|1|2|G|1237
6Y7C|1|2|A|1238
6Y7C|1|2|U|1239
6Y7C|1|2|U|1240
6Y7C|1|2|G|1241
6Y7C|1|2|A|1242
6Y7C|1|2|G|1243
6Y7C|1|2|A|1244
6Y7C|1|2|G|1245
6Y7C|1|2|C|1246
6Y7C|1|2|U|1247
6Y7C|1|2|C|1248
6Y7C|1|2|U|1249
6Y7C|1|2|U|1250
6Y7C|1|2|U|1251
6Y7C|1|2|C|1252
6Y7C|1|2|U|1253
6Y7C|1|2|U|1254
6Y7C|1|2|G|1255
6Y7C|1|2|A|1256
6Y7C|1|2|U|1257

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S12

Chain P

40S ribosomal protein S15

Chain i

Essential nuclear protein 1

Chain j

Protein LTV1