HL_6Y7C_033

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUGUAAUUAUUG

Length

14 nucleotides

Bulged bases

6Y7C|1|2|U|1554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|C|1549
6Y7C|1|2|A|1550
6Y7C|1|2|U|1551
6Y7C|1|2|U|1552
6Y7C|1|2|G|1553
6Y7C|1|2|U|1554
6Y7C|1|2|A|1555
6Y7C|1|2|A|1556
6Y7C|1|2|U|1557
6Y7C|1|2|U|1558
6Y7C|1|2|A|1559
6Y7C|1|2|U|1560
6Y7C|1|2|U|1561
6Y7C|1|2|G|1562

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A

Chain i

Essential nuclear protein 1

Chain j

Protein LTV1