HL_6Y7C_039

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCCAGCAGCCGCGGUAAUUC

Length

22 nucleotides

Bulged bases

6Y7C|1|2|A|579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|G|562
6Y7C|1|2|U|563
6Y7C|1|2|G|564
6Y7C|1|2|C|565
6Y7C|1|2|C|566
6Y7C|1|2|A|567
6Y7C|1|2|G|568
6Y7C|1|2|C|569
6Y7C|1|2|A|570
6Y7C|1|2|G|571
6Y7C|1|2|C|572
6Y7C|1|2|C|573
6Y7C|1|2|G|574
6Y7C|1|2|C|575
6Y7C|1|2|G|576
6Y7C|1|2|G|577
6Y7C|1|2|U|578
6Y7C|1|2|A|579
6Y7C|1|2|A|580
6Y7C|1|2|U|581
6Y7C|1|2|U|582
6Y7C|1|2|C|583

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A

Chain l

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1