HL_6Y7C_041

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGUUUUUUUAAUGACC

Length

17 nucleotides

Bulged bases

6Y7C|1|2|U|1052, 6Y7C|1|2|U|1057, 6Y7C|1|2|U|1058, 6Y7C|1|2|U|1059, 6Y7C|1|2|U|1060, 6Y7C|1|2|A|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|G|1051
6Y7C|1|2|U|1052
6Y7C|1|2|G|1053
6Y7C|1|2|U|1054
6Y7C|1|2|U|1055
6Y7C|1|2|U|1056
6Y7C|1|2|U|1057
6Y7C|1|2|U|1058
6Y7C|1|2|U|1059
6Y7C|1|2|U|1060
6Y7C|1|2|A|1061
6Y7C|1|2|A|1062
6Y7C|1|2|U|1063
6Y7C|1|2|G|1064
6Y7C|1|2|A|1065
6Y7C|1|2|C|1066
6Y7C|1|2|C|1067

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0-A

Chain B

40S ribosomal protein S1-A

Chain R

40S ribosomal protein S17-A