HL_6YAL_012
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAL_012 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.2126
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6YAL|1|2|U|406
6YAL|1|2|C|407
6YAL|1|2|A|408
6YAL|1|2|G|409
6YAL|1|2|G|410
6YAL|1|2|G|411
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein uS5
- Chain L
- 40S ribosomal protein uS4
- Chain N
- 40S ribosomal protein uS17
- Chain Y
- 40S ribosomal protein uS8
- Chain Z
- 40S ribosomal protein uS12
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