HL_6YAL_013

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6YAL|1|2|C|440, 6YAL|1|2|G|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAL_013 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1045

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6YAL|1|2|C|431
6YAL|1|2|C|432
6YAL|1|2|U|433
6YAL|1|2|G|434
6YAL|1|2|A|435
6YAL|1|2|G|436
6YAL|1|2|A|437
6YAL|1|2|A|438
6YAL|1|2|A|439
6YAL|1|2|C|440
6YAL|1|2|G|441
6YAL|1|2|G|442

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain I

40S ribosomal protein eS6

Chain K

40S ribosomal protein eS8