HL_6YAL_022

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAL_022 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.5647

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YAL|1|2|U|881
6YAL|1|2|A|882
6YAL|1|2|U|883
6YAL|1|2|U|884
6YAL|1|2|U|885
6YAL|1|2|U|886
6YAL|1|2|G|887
6YAL|1|2|U|888
6YAL|1|2|U|889
6YAL|1|2|G|890
6YAL|1|2|G|891
6YAL|1|2|U|892
6YAL|1|2|U|893
6YAL|1|2|U|894
6YAL|1|2|U|895
6YAL|1|2|C|896
6YAL|1|2|G|897

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein uS17