HL_6YAL_035

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAL_035 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1523

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6YAL|1|2|C|1560
6YAL|1|2|G|1561
6YAL|1|2|G|1562
6YAL|1|2|C|1563
6YAL|1|2|A|1564
6YAL|1|2|G|1565

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein uS13

Chain V

40S ribosomal protein eS19