HL_6YAM_001
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAGCGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 6YAM|1|1|G|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAM_001 not in the Motif Atlas
- Geometric match to HL_4V88_198
- Geometric discrepancy: 0.235
- The information below is about HL_4V88_198
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6YAM|1|1|C|14
6YAM|1|1|A|15
6YAM|1|1|G|16
6YAM|1|1|C|17
6YAM|1|1|G|18
6YAM|1|1|G|19
6YAM|1|1|A|20
6YAM|1|1|A|21
6YAM|1|1|G|22
Current chains
- Chain 1
- initiator methionylated tRNA
Nearby chains
- Chain A
- eukaryotic translation initiation factor 2 subunit alpha
Coloring options: