HL_6YAM_003
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAM_003 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.3783
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6YAM|1|1|G|53
6YAM|1|1|A|54
6YAM|1|1|U|55
6YAM|1|1|C|56
6YAM|1|1|G|57
6YAM|1|1|A|58
6YAM|1|1|A|59
6YAM|1|1|A|60
6YAM|1|1|C|61
Current chains
- Chain 1
- initiator methionylated tRNA
Nearby chains
- Chain A
- eukaryotic translation initiation factor 2 subunit alpha
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