HL_6YAM_006

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6YAM|1|2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAM_006 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1696

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6YAM|1|2|G|156
6YAM|1|2|U|157
6YAM|1|2|A|158
6YAM|1|2|A|159
6YAM|1|2|U|160
6YAM|1|2|U|161
6YAM|1|2|C|162

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein eS6

Chain a

40S ribosomal protein eS24

Chain k

ATP-binding cassette sub-family E member 1 (ABCE1)