3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GUAAUUC
Length
7 nucleotides
Bulged bases
6YAM|1|2|U|161
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YAM_006 not in the Motif Atlas
Homologous match to HL_4V88_188
Geometric discrepancy: 0.1696
The information below is about HL_4V88_188
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6YAM|1|2|G|156
6YAM|1|2|U|157
6YAM|1|2|A|158
6YAM|1|2|A|159
6YAM|1|2|U|160
6YAM|1|2|U|161
6YAM|1|2|C|162

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain I
40S ribosomal protein eS6
Chain a
40S ribosomal protein eS24
Chain k
ATP-binding cassette sub-family E member 1 (ABCE1)

Coloring options:


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