3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
6YAM|1|2|C|440, 6YAM|1|2|G|441
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YAM_013 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.1045
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6YAM|1|2|C|431
6YAM|1|2|C|432
6YAM|1|2|U|433
6YAM|1|2|G|434
6YAM|1|2|A|435
6YAM|1|2|G|436
6YAM|1|2|A|437
6YAM|1|2|A|438
6YAM|1|2|A|439
6YAM|1|2|C|440
6YAM|1|2|G|441
6YAM|1|2|G|442

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain G
40S ribosomal protein eS4
Chain I
40S ribosomal protein eS6
Chain K
40S ribosomal protein eS8

Coloring options:


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