HL_6YAM_022

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAM_022 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.5647

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YAM|1|2|U|881
6YAM|1|2|A|882
6YAM|1|2|U|883
6YAM|1|2|U|884
6YAM|1|2|U|885
6YAM|1|2|U|886
6YAM|1|2|G|887
6YAM|1|2|U|888
6YAM|1|2|U|889
6YAM|1|2|G|890
6YAM|1|2|G|891
6YAM|1|2|U|892
6YAM|1|2|U|893
6YAM|1|2|U|894
6YAM|1|2|U|895
6YAM|1|2|C|896
6YAM|1|2|G|897

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein uS17