HL_6YAM_023
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAM_023 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1463
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6YAM|1|2|A|953
6YAM|1|2|G|954
6YAM|1|2|G|955
6YAM|1|2|U|956
6YAM|1|2|G|957
6YAM|1|2|A|958
6YAM|1|2|A|959
6YAM|1|2|A|960
6YAM|1|2|U|961
6YAM|1|2|U|962
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- beta-globin mRNA
- Chain A
- eukaryotic translation initiation factor 2 subunit alpha
- Chain H
- 40S ribosomal protein uS7
- Chain Q
- 40S ribosomal protein uS11
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