HL_6YAM_027

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAM_027 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0803

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6YAM|1|2|G|1137
6YAM|1|2|G|1138
6YAM|1|2|A|1139
6YAM|1|2|A|1140
6YAM|1|2|A|1141
6YAM|1|2|C|1142

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein uS5

Chain Y

40S ribosomal protein uS8

Chain b

40S ribosomal protein eS26