HL_6YAN_001

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

6YAN|1|1|G|18, 6YAN|1|1|G|19, 6YAN|1|1|A|20, 6YAN|1|1|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAN_001 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2212

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6YAN|1|1|C|14
6YAN|1|1|A|15
6YAN|1|1|G|16
6YAN|1|1|C|17
6YAN|1|1|G|18
6YAN|1|1|G|19
6YAN|1|1|A|20
6YAN|1|1|A|21
6YAN|1|1|G|22

Current chains

Chain 1

initiator methionylated tRNA

Nearby chains

Chain A

Eukaryotic translation initiation factor 2 subunit 1