HL_6YAN_002
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GCCCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAN_002 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1234
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6YAN|1|1|G|31
6YAN|1|1|C|32
6YAN|1|1|C|33
6YAN|1|1|C|34
6YAN|1|1|A|35
6YAN|1|1|U|36
6YAN|1|1|T6A|37
6YAN|1|1|A|38
6YAN|1|1|C|39
Current chains
- Chain 1
- initiator methionylated tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- histone 4 (H4) mRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain R
- Ribosomal protein S15
- Chain S
- ribosomal protein uS9
Coloring options: