HL_6YAN_022

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAN_022 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.5214

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YAN|1|2|U|881
6YAN|1|2|A|882
6YAN|1|2|U|883
6YAN|1|2|U|884
6YAN|1|2|U|885
6YAN|1|2|U|886
6YAN|1|2|G|887
6YAN|1|2|U|888
6YAN|1|2|U|889
6YAN|1|2|G|890
6YAN|1|2|G|891
6YAN|1|2|U|892
6YAN|1|2|U|893
6YAN|1|2|U|894
6YAN|1|2|U|895
6YAN|1|2|C|896
6YAN|1|2|G|897

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6

Chain N

Ribosomal protein S11