HL_6YAN_025
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6YAN|1|2|U|1057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAN_025 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1463
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6YAN|1|2|G|1050
6YAN|1|2|A|1051
6YAN|1|2|U|1052
6YAN|1|2|C|1053
6YAN|1|2|A|1054
6YAN|1|2|G|1055
6YAN|1|2|A|1056
6YAN|1|2|U|1057
6YAN|1|2|A|1058
6YAN|1|2|C|1059
6YAN|1|2|C|1060
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- histone 4 (H4) mRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain Q
- 40S ribosomal protein uS11
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