HL_6YAN_029
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GAC(C4J)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6YAN|1|2|A|1249
- QA status
- Modified nucleotides: C4J
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAN_029 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.2023
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YAN|1|2|G|1241
6YAN|1|2|A|1242
6YAN|1|2|C|1243
6YAN|1|2|C4J|1244
6YAN|1|2|C|1245
6YAN|1|2|A|1246
6YAN|1|2|A|1247
6YAN|1|2|C|1248
6YAN|1|2|A|1249
6YAN|1|2|C|1250
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain R
- Ribosomal protein S15
- Chain S
- ribosomal protein uS9
- Chain W
- Ribosomal_S10 domain-containing protein
- Chain e
- ribosomal protein uS14
- Chain f
- ribosomal protein eS31
Coloring options: