3D structure

PDB id
6YAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.48 Å

Loop

Sequence
GAC(C4J)CAACAC
Length
10 nucleotides
Bulged bases
6YAN|1|2|A|1249
QA status
Modified nucleotides: C4J

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YAN_029 not in the Motif Atlas
Homologous match to HL_8P9A_215
Geometric discrepancy: 0.2023
The information below is about HL_8P9A_215
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6YAN|1|2|G|1241
6YAN|1|2|A|1242
6YAN|1|2|C|1243
6YAN|1|2|C4J|1244
6YAN|1|2|C|1245
6YAN|1|2|A|1246
6YAN|1|2|A|1247
6YAN|1|2|C|1248
6YAN|1|2|A|1249
6YAN|1|2|C|1250

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Transfer RNA; tRNA
Chain R
Ribosomal protein S15
Chain S
ribosomal protein uS9
Chain W
Ribosomal_S10 domain-containing protein
Chain e
ribosomal protein uS14
Chain f
ribosomal protein eS31

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