HL_6YBV_001
3D structure
- PDB id
- 6YBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex - eIF2-TC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCAGCGGAAGC
- Length
- 11 nucleotides
- Bulged bases
- 6YBV|1|w|C|16, 6YBV|1|w|G|17, 6YBV|1|w|G|18, 6YBV|1|w|A|19, 6YBV|1|w|A|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YBV_001 not in the Motif Atlas
- Geometric match to HL_6WBR_004
- Geometric discrepancy: 0.3776
- The information below is about HL_6WBR_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6YBV|1|w|G|12
6YBV|1|w|C|13
6YBV|1|w|A|14
6YBV|1|w|G|15
6YBV|1|w|C|16
6YBV|1|w|G|17
6YBV|1|w|G|18
6YBV|1|w|A|19
6YBV|1|w|A|20
6YBV|1|w|G|21
6YBV|1|w|C|22
Current chains
- Chain w
- Initiator methionine tRNA
Nearby chains
- Chain r
- Eukaryotic translation initiation factor 2 subunit 1
- Chain s
- Eukaryotic translation initiation factor 2 subunit 2
Coloring options: