HL_6YBW_006

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

6YBW|1|A|C|324, 6YBW|1|A|C|325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YBW_006 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3798

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6YBW|1|A|C|322
6YBW|1|A|C|323
6YBW|1|A|C|324
6YBW|1|A|C|325
6YBW|1|A|C|326
6YBW|1|A|G|327
6YBW|1|A|U|328
6YBW|1|A|G|329

Current chains

Chain A

18S rRNA

Nearby chains