HL_6YBW_007
3D structure
- PDB id
- 6YBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex - 40S body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCGCCGUGCC
- Length
- 11 nucleotides
- Bulged bases
- 6YBW|1|A|G|385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YBW_007 not in the Motif Atlas
- Geometric match to HL_8GLP_091
- Geometric discrepancy: 0.0736
- The information below is about HL_8GLP_091
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50525.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6YBW|1|A|G|377
6YBW|1|A|U|378
6YBW|1|A|C|379
6YBW|1|A|G|380
6YBW|1|A|C|381
6YBW|1|A|C|382
6YBW|1|A|G|383
6YBW|1|A|U|384
6YBW|1|A|G|385
6YBW|1|A|C|386
6YBW|1|A|C|387
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain R
- 40S ribosomal protein S8
Coloring options: