HL_6YBW_008

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YBW_008 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1479

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6YBW|1|A|U|416
6YBW|1|A|C|417
6YBW|1|A|A|418
6YBW|1|A|G|419
6YBW|1|A|G|420
6YBW|1|A|G|421

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain D

40S ribosomal protein S9

Chain E

40S ribosomal protein S23

Chain J

40S ribosomal protein S15a

Chain L

40S ribosomal protein S2