HL_6YBW_020

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YBW_020 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1785

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6YBW|1|A|A|957
6YBW|1|A|G|958
6YBW|1|A|G|959
6YBW|1|A|U|960
6YBW|1|A|G|961
6YBW|1|A|A|962
6YBW|1|A|A|963
6YBW|1|A|A|964
6YBW|1|A|U|965
6YBW|1|A|U|966

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain P

40S ribosomal protein S14