HL_6YDP_007

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_007 not in the Motif Atlas

Geometric match to HL_4WF9_020

Geometric discrepancy: 0.1278

The information below is about HL_4WF9_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6YDP|1|AA|C|198
6YDP|1|AA|G|199
6YDP|1|AA|A|200
6YDP|1|AA|A|201
6YDP|1|AA|A|202
6YDP|1|AA|G|203

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AP

28S ribosomal protein S16, mitochondrial

Chain Ad

Mitochondrial ribosomal protein S26

Chain Aj

mS34

Chain Ap

28S ribosomal protein S18b, mitochondrial